The InSiGHT database includes classifications of pathogenicity for MMR variants with evidential basis (variants and classifications alone are also shown on ClinVar). An explanation of the methodology can be found in Thompson BA, et al. Nat Genet 2014.
The full spectrum of nonsense, frameshift, splice, missense and large deletions/rearrangements is seen. Large deletions involving EPCAM (adjoining MSH2) can cause a rare form of LS characterised by a predisposition largely to GI cancers. Constitutional methylation of the MLH1 promoter can also cause LS. This is usually sporadic and not heritable, but some cases have heritable chromosomal rearrangements that cause MLH1 promoter methylation, by involving the LRRFIP2 gene that adjoins MLH1.
Constitutional Mismatch Repair Disorder (CMMR-D) occurs in individuals who inherit pathogenic mutations in both alleles of the same MMR gene. They suffer from a ‘classical’ DNA repair disorder with, amongst other things, a high risk of haematological and CNS tumours at a young age, and multiple colorectal adenomas.
There is undoubtedly a spectrum of CMMR-D, as one hypomorphic PMS2 mutation found in the Arctic Inuit is present at a frequency of 1/16 and homozygotes may only present with colorectal cancer in their 30s.
The Prospective Lynch Syndrome Database (PLSD) now provides the most accurate estimates of cancer risks in LS, both in individuals who have yet to develop a cancer and those who have survived a cancer. An individual’s risks can be found according to their age, gender and the underlying gene.
Lynch syndrome-related tumours include:
- Colon and rectal cancer
- Endometrial cancer
- Small intestine cancer (MSH2 & MLH1)
- Hepato-biliary and pancreatic cancer (MSH2 & MLH1)
- Gastric cancer (MSH2 & MLH1)
- Ovarian non-serous cancer (MSH2 & MLH1)
- Renal pelvis and ureter cancer (MSH2 & MSH6)
- Bladder cancer(MSH2 & MSH6)
- Sebaceous gland cancer (and adenoma – Muir-Torre syndrome)
- Prostate cancer (MSH2)
- Breast cancer (MLH1)
- Central nervous system cancer
The risks associated with some EPCAM deletions appear not to be restricted to GI cancers.
Lifestyle and environmental influences
A number of factors modify the risks of cancer in LS:
- Weight – risk increases in proportion to increasing weight
- Smoking – risk is increased in smokers
- Alcohol – risk increased with consumption, in particular colon cancer risk with spirits and rectal cancer risk with beer/cider
- Parity – reduces risk
- Hormones – HRT reduces risk; OCP makes no difference
- NSAID use – aspirin/ibuprofen decreases risk
- Vitamin and mineral supplements – multivitamins and calcium supplements reduce risk; folate makes no difference
Cancers due to LS are characterised by loss of MMR in their cells, which usually (but not invariably) manifests as microsatellite instability (MSI) and abnormality of MMR protein expression on immunohistochemistry (IHC). See: Canadian Agency for Drugs and Technologies in Health report and Frayling, IM and Arends MJ. ‘How can histopathologists help clinical genetics in the investigation of suspected hereditary gastrointestinal cancer?’ Diagnostic Histopathol 2015.
Also available are Best practice guidelines for LS laboratory testing, including constitutional and tumour tests, and External quality assurance (EQA) of MSI testing.
Note that MSI in rectal cancers is unusual, but when seen usually indicates LS. However, colon cancers may also lose MMR repair due to sporadic methylation of the MLH1 promotor, which is increasingly likely over the age of about 60y, hence the predictive value for LS of MSI in a colon cancer is age-dependent.
In sporadic colon cancers with MSI the presence of the BRAF V600E mutation is often, but not invariably found. However, it is not found in colon cancers due to LS.
The MLH1 gene promoter is typically methylated in sporadic colon cancers with loss of MMR and MSI. A small proportion of cases is due to constitutional and potentially heritable methylation. Testing for MLH1 promotor methylation is an alternative to BRAF testing.
IHC to detect abnormality of MMR expression is a technique complementary to MSI, BRAF and MLH1 methylation testing. MMR IHC used for diagnostic purposes should only be performed with appropriate external quality assurance (see UK and NordiQC examples) and optimisation of staining protocols.
Interpretation of IHC findings
The earlier view that patterns of MMR IHC abnormality conformed to simple relationships to the underlying inherited genetic mutation is now known to be more complex. Some tumours acquire somatic mutations in MMR genes due to underlying mutations in other genes such as MUTYH, POLD1 etc and so they may appear to be due to LS when they are not, a phenomenon that has been termed Lynch-like Syndrome (LLS).
Colonoscopic surveillance is the cornerstone of management, and is supported by a strong evidence base. Prophylactic colectomy or extended resection for colorectal cancer can be considered, and there is evidence that aspirin has a chemopreventive effect. The current CAPP3 trial is aimed at identifying the optimal dose. MMR gene mutation appears to influence the effect of some chemotherapeutic agents, and should be taken into account.
Surveillance is also sometimes employed at other potential tumour sites, and prophylactic hysterectomy and oophorectomy should be considered in women who have completed their families.
Various good quality published guidelines are available for download below.
There are now a number of support groups or other sources of informationfor patients and families with Lynch syndrome:
- Lynch Syndrome International is a US based international group offering support for individuals with Lynch syndrome and creating public awareness of the syndrome.
- Macmillan Cancer Support
- Lynch syndrome UK aims to educate and empower people living with Lynch syndrome and support to them and their families
Content updated 18 Oct 2016